SubtiBank SubtiBank
yodA
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yodA

similar to malonate semialdehyde decarboxylase
locus
BSU_19530
pI
4.74
mw
14.46 kDa
protein length
129 aa Sequence Blast
gene length
390 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    2,126,549 2,126,938

    The protein

    Protein family

  • [SW|4-oxalocrotonate tautomerase family] (according to UniProt)

    • Paralogous protein(s)

  • [protein|877C25D538BAF1132290BAF7FBB2E7921B51266A|YusQ], [protein|9A56CC9B3C33D74A7349112930ADF627099DA907|YrdN]

    • Structure

  • [PDB|2AAG] (from Pseudomonas pavonaceae, 52% identity) [pubmed|16274229]

    • Expression and Regulation

    Operons

    genes
    [gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B432 (yodA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1431 NBRP B. subtilis, Japan]
  • BKE19530 ([gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACTCCTCCTCTTA, downstream forward: _UP4_TAAGATTTCGTCTCCCCACA
  • BKK19530 ([gene|1F6B2CF88F5C6498A035FA0465136EF9D0BF93BC|yodA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19530 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTGTACTCCTCCTCTTA, downstream forward: _UP4_TAAGATTTCGTCTCCCCACA

    • References

    Research papers

  • 16274229