SubtiBank SubtiBank
yfnD
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yfnD

unknown
locus
BSU_07310
pI
5.47
mw
36.97 kDa
protein length
311 aa Sequence Blast
gene length
936 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    802,351 803,286

    Expression and Regulation

    Operons

    genes
    [gene|B25AE6979AF12628780C4489FFED966C6B31968A|yfnH]-[gene|9836E90BD443F5269A43E5C69FCF2CCB22EDF65B|yfnG]-[gene|4148A3F8E256D9B1D667C28428D867B5B6B5F3CE|yfnF]-[gene|E3481379D3FEC02C35CB4BE17A5246A208C5C86D|yfnE]-[gene|1D0286ECDA32FB21737170B54A57D3FE482C6422|yfnD]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|15383836], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]
  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, internal promoter in [protein|E3481379D3FEC02C35CB4BE17A5246A208C5C86D|YfnE] open reading frame [Pubmed|15383836], see [http://dbtbs.hgc.jp/COG/prom/yfnHGFED.html DBTBS] for details, in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]

    • regulatory mechanism

  • [protein|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE]: activation, [Pubmed|26577401], in [regulon|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE regulon]

    • regulation

  • expressed during sporulation ([protein|search|SigK]) [Pubmed|15383836]
    • view in new tab

    genes
    [gene|1D0286ECDA32FB21737170B54A57D3FE482C6422|yfnD]
    description
    [Pubmed|22383849]

    regulation

  • expressed during sporulation ([protein|search|SigK], [protein|search|SigE]) [Pubmed|15383836]
    • view in new tab

    genes
    [gene|E3481379D3FEC02C35CB4BE17A5246A208C5C86D|yfnE]-[gene|1D0286ECDA32FB21737170B54A57D3FE482C6422|yfnD]
    description
    [Pubmed|22383849]

    regulation

  • expressed during sporulation ([protein|search|SigK]) [Pubmed|15383836]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-C230 (yfnD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2228 NBRP B. subtilis, Japan]
  • BKE07310 ([gene|1D0286ECDA32FB21737170B54A57D3FE482C6422|yfnD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGTTGAAAAATGAAATGTAC, downstream forward: _UP4_TAAAAAACCCCCTGCCGCCT
  • BKK07310 ([gene|1D0286ECDA32FB21737170B54A57D3FE482C6422|yfnD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07310 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CGTTGAAAAATGAAATGTAC, downstream forward: _UP4_TAAAAAACCCCCTGCCGCCT

    • References

  • 15383836