SubtiBank SubtiBank
SR7P
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SR7P

antisense RNA to [gene|789D08564463542B8D96FC12F408549A669703CE|rpsD] and small effector protein for the control of [protein|67651D5D3122A89F57F9E7D49074C82A8990A277|Eno]-[protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] interaction
locus
new_3036310_3036529_c
pI
0.00
mw
0.00 kDa
gene length
220 bp Sequence Blast
function
control of [gene|789D08564463542B8D96FC12F408549A669703CE|rpsD] expression, control of [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity
product
antisense RNA to [gene|789D08564463542B8D96FC12F408549A669703CE|rpsD], regulatory protein
essential
no
synonyms
S1136,SR7
Outlinks
KEGGBsubCyc

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.2|RNA synthesis and degradation] → [category|SW 3.2.4|RNases] → [category|SW 3.2.4.5|Effectors of RNA degradation]
  • [category|SW 6|Groups of genes] → [category|SW 6.9|NcRNA] → [category|SW 6.9.5|Regulatory RNAs]

    • Gene

    Coordinates
    3,036,310 → 3,036,529

    RNA

    Catalyzed reaction/ biological activity

  • control of [gene|789D08564463542B8D96FC12F408549A669703CE|rpsD] expression, acts as antisense RNA [pubmed|26115952]

    • The protein

    Catalyzed reaction/ biological activity

  • control of [protein|67651D5D3122A89F57F9E7D49074C82A8990A277|Eno]-[protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] interaction, the presence of the small protein enhances the interaction as well as [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y] activity [pubmed|32752915]

    • Expression and Regulation

    Operons

    genes
    [gene|19080097FD3F48C730C355DE84C1922206A07AFF|SR7P]-[gene|A404BDF296F44CDEE6E0B6290369C6657A56D12A|S1134]
    description
    [pubmed|22383849]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [pubmed|26115952], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
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    References

    Reviews

  • 32850966

    • Research papers

  • 26115952,32752915