xkdN [2018-10-10 17:48:37]

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xkdN [2018-10-10 17:48:37]

unknown PBSX prophage protein

locus

BSU12671

pI

5.03

mw

17.00 kDa

protein length

148 aa Sequence Blast

gene length

444 bp Sequence Blast

function

unknown

product

unknown

essential

no

synonyms

Outlinks

KEGG BsubCyc SubtiList UniProt Expression Browser

Genomic Context

Hide small RNAs Zoom:

categories

[category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.1|PBSX prophage]

Gene

Coordinates

1,334,339 → 1,334,785

Expression and Regulation

Operons

genes

[gene|DD4F52FE386EF75009ECF594ED4E2D1593220E4F|xtmA]-[gene|277F51EB4FE2BAB0FD1808EDE25705E10833AD0A|xtmB]-[gene|E77DD93E3CDCA9B81106E6AB0F18513360AAE9DB|xkdE]-[gene|6542BE447872C1A16C056DA21BD7A23C65F5C543|xkdF]-[gene|38173C76C27A7178CEE66E3642533EB34828C2CB|xkdG]-[gene|81C6812565B3E8ADCB19F52BDFFA9E55B94A2E9D|xkdH]-[gene|5ACCC439AD8849355094F8C5FC6EF29A9077EF58|xkdI]-[gene|6DF19E4546509687CA194F6B44EEB723C9467B9C|xkdJ]-[gene|31B1832E5EAD957EE6A5C7CB0C117EC0F26AA8AB|xkdK]-[gene|683D350D98AC0D27951145AD87830B89C0B4F393|xkdM]-[gene|0BF8AD1ACD0BBA6913636081B41E6D04D16D1BA2|xkdN]-[gene|156A8B699B32B268EBA1A0A1620C95D0DF630A4E|xkzB]-[gene|CD97483876F4FCCE451AD4F2A8AFD6F560074769|xkdO]-[gene|ED35852FAAD386CFB43F8D3DDEF28F7B05EC8B43|xkdP]-[gene|D5FDCC792D0E6B8D35BCDDC0D7B76025ACC900FF|xkdQ]-[gene|AF9706F2EBF056A404B5D7640D78D1E833805225|xkdR]-[gene|C222F247C225FD6DEBB103DFB169AEF87DFC0C0D|xkdS]-[gene|1234C9BC164FB47E003009E943124982260221C0|xkdT]-[gene|BDE032590D5F3504CDB4D6BD545153D681B65ADD|xkdU]-[gene|3BCF7587145CFEDEA2F36512ABF62D6B6A2886C5|xkzA]-[gene|9FAAA2E63B161862396C47CE5D1EA9191847FDAD|xkdV]-[gene|1F152F97AD20DABAC1D83EDC2177F46EAECC562C|xkdW]-[gene|787561F433911D090F801AD493F688895498542F|xkdX]-[gene|27BB6659541BA5368DEDB19EADCD372CE41244F5|xepA]-[gene|630FC0D9BDD243D6BF94DBDE506EC2A9CB0AAFE6|xhlA]-[gene|360D866E939DDB822AFAC589D563B191A88695CD|xhlB]-[gene|50D7B97E4D3D41F74EF1942B85DE1DA4A33BEBB0|xlyA]

description

[Pubmed|22383849,2110147]

sigma factors

[protein|458406A4E6824C24493CFC19718F10720AA3B453|Xpf]: sigma factor, [Pubmed|8083174], in [regulon|458406A4E6824C24493CFC19718F10720AA3B453|Xpf regulon]

regulation

expression during spore [SW|germination] is strongly reduced under conditions of osmotic stress [Pubmed|27766092]

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Biological materials

Mutant

BKE12671 (Δ[gene|0BF8AD1ACD0BBA6913636081B41E6D04D16D1BA2|xkdN]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12671 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAAAAAAACTCCCTTG, downstream forward: _UP4_TAGTAAAGGATGGCGATAAG

BKK12671 (Δ[gene|0BF8AD1ACD0BBA6913636081B41E6D04D16D1BA2|xkdN]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12671 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAAAAAAACTCCCTTG, downstream forward: _UP4_TAGTAAAGGATGGCGATAAG