SubtiBank SubtiBank
ylqD
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ylqD

unknown
locus
BSU_16010
pI
8.13
mw
14.90 kDa
protein length
128 aa Sequence Blast
gene length
387 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    1,674,259 1,674,645

    Expression and Regulation

    Operons

    genes
    [gene|8F559BFC80FE56EA0389A2336F4E9E6908562BCB|ylxM]-[gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh]-[gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP]-[gene|67FB5F6FB0B2701BD8E4FDD8DF06B236DE6A2599|ylqC]-[gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]-[gene|34B0FA6E7E25D1E5D8A54B70F5562BD0BD05B498|rimM]-[gene|885ECD9FAAC8BC95D32F049825D6B6244C046112|trmD]-[gene|51368512B8322EDBCA92674EC2B97CF26087D8A9|rplS]
    description
    [Pubmed|29794222]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8335643], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulation

  • the mRNA is processed between [gene|EC025F78D0BCBD91162BAAB9EAB7D3837E0A3208|ffh] and [gene|25C4850812DC216C1BEFBF07DCA71CC6820930B0|rpsP] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]
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    Biological materials

    Mutant

  • MGNA-B174 (ylqD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1173 NBRP B. subtilis, Japan]
  • BKE16010 ([gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE16010 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGCACCAAGCTCCCCGC, downstream forward: _UP4_ATTGAAATTCGCCAGAGGTG
  • BKK16010 ([gene|0AB1FB44E8F28944B82B5EF14A9CDCFEE46DB76B|ylqD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK16010 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCGCACCAAGCTCCCCGC, downstream forward: _UP4_ATTGAAATTCGCCAGAGGTG