SubtiBank SubtiBank
scr [Mon Oct 03 2016 18:39:55 GMT+0200 (CEST)]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

scr [Mon Oct 03 2016 18:39:55 GMT+0200 (CEST)]

4.5 S RNA, causes RNA-driven elongation arrest by interaction with the 23S rRNA
locus
BSU_misc_RNA_2
pI
0.00
mw
0.00 kDa
function
presecretory protein translocation
product
small cytoplasmic RNA (scRNA, 4.5S RNA)
essential
yes
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.5|Protein secretion]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]
  • [category|SW 6|Groups of genes] → [category|SW 6.9|NcRNA] → [category|SW 6.9.3|Small cytoplasmatic RNA]
  • [SW|Categories] containing this gene/protein

  • [SW|protein secretion], [SW|essential genes], [SW|ncRNA], [SW|household RNA]
  • Gene

    Coordinates on the chromosome (coding sequence)
    26,533 -> 26,635

    Phenotypes of a mutant

  • the gene is essential [Pubmed|7506707]
  • The protein

    Catalyzed reaction/ biological activity

  • === Extended information on the RNA===
  • Structure

  • [PDB|4UE4] (complex [protein|search|Ffh]-[protein|search|Scr] RNA) [Pubmed|26344568]
  • [SW|Interactions]

  • [protein|search|Scr]-[protein|search|Ffh] in the [SW|signal recognition particle] [Pubmed|26344568]
  • [protein|search|Scr]-[[23S rRNA]] [Pubmed|26344568]
  • Expression and Regulation

    Operon

  • ''[protein|search|yaaJ]-[protein|search|scr], [protein|search|scr]
  • [SW|Sigma factor]

  • [protein|search|SigA] (both promoters)
  • Labs working on this gene/RNA

  • [SW|David Bechhofer], Mount Sinai School, New York, USA [http://www.mountsinai.org/Research/Centers Laboratories and Programs/Bechhofer Laboratory?citype=Physician&ciid=Bechhofer David H 1255565 Homepage]
  • References

    Reviews

  • 25212246
  • Original publications

  • 9346318,2468993,17576666,1372600,7506707,1383945,7538759,10224127,9677377,8662730,10222262,25270875,25402410,26344568,26883633