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melD [2019-05-31 14:28:42]
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melD [2019-05-31 14:28:42]

[SW|ABC transporter] subunit for melibiose and raffinose (permease)
locus
BSU30280
pI
9.08
mw
34.01 kDa
protein length
303 aa Sequence Blast
gene length
912 bp Sequence Blast
function
uptake of melibiose and raffinose
product
[SW|ABC transporter] (permease)
essential
no
synonyms
amyD
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.21|Utilization of melibiose]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,099,123 3,100,034

    The protein

    Protein family

  • [SW|Binding-protein-dependent transport system permease family] (according to Uni-Prot)

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 30% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|melR]-[gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE]-[gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]-[gene|4E766839240C8F7D56D87DF9E7B99350A83B5FF7|melC]-[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22900538,31138628], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|22900538], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|MelR]: repression, [pubmed|31138628], in [regulon|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|MelR regulon]

    • regulation

  • induced by melibiose or raffinose ([protein|58276E6FEF9388BBC7FB79BB5A3A1EF3C3DA5BD5|MelR]) [pubmed|31138628]
  • repressed by glucose ([protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]) [Pubmed|22900538,31138628]
  • there is an additional RNA "upshift" signal in front of the [gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE] gene suggestive of a [gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE]-[gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]-[gene|4E766839240C8F7D56D87DF9E7B99350A83B5FF7|melC]-[gene|CDE9EF9CFB799794D525F12DEC8C4190C6298575|melA] mRNA [Pubmed|22383849]. However, there is no promoter in front of [gene|C3D7C64AD0E58BF326257E23136466A237138B50|melE], suggesting that this mRNA may be the product of mRNA processing [pubmed|31138628]
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    Biological materials

    Mutant

  • MGNA-A799 (amyD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/799 NBRP B. subtilis, Japan]
  • BKE30280 ([gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTCACATGAACGTCCCTTG, downstream forward: _UP4_AAAAGAAAGGAGACGGAAAT
  • BKK30280 ([gene|05BFEA711D82395A55B505E5A38286BE2F570350|melD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30280 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTCACATGAACGTCCCTTG, downstream forward: _UP4_AAAAGAAAGGAGACGGAAAT

    • References

  • 10092453,22383849,22900538,26235029,31138628