You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydeL

similar to transcriptional regulator ([SW|MocR/ GabR family])

locus

BSU_05240

9.22

53.36 kDa

protein length

463 aa Sequence Blast

gene length

1392 bp Sequence Blast

function

unknown

product

unknown

essential

synonyms

Outlinks

KEGG BsubCyc SubtiList UniProt Expression Browser

Genomic Context

Hide small RNAs Zoom:

categories

[category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates

571,389 572,780

The protein

Protein family

[SW|MocR/ GabR family ][Pubmed|22020104]

[SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)

[SW|Domains]

N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.

[SW|HTH gntR-type domain] (aa 13-81) (according to UniProt)

[SW|Cofactors]

PLP

Structure

[PDB|4MGR] ([protein|C7C36FAC0CE72226960FC7E8E016B8EC77AF1036|GabR], 38% identity) [pubmed|24127574]

[SW|Localization]

nucleoid (Homogeneous) [Pubmed|16479537]

Biological materials

Mutant

MGNA-C083 (ydeL::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2081 NBRP B. subtilis, Japan]

BKE05240 ([gene|05A23F4611674B0092262DEC309F7AD6B9B5BE30|ydeL]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG

BKK05240 ([gene|05A23F4611674B0092262DEC309F7AD6B9B5BE30|ydeL]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05240 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTGCGCGTTGTTCTCCT, downstream forward: _UP4_TGAGGGAGCTTTCAGTTTAG

References

11756427,16479537,21630458,22020104,24127574