SubtiBank SubtiBank
yuxO
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yuxO

similar to thioesterase
locus
BSU_31670
pI
6.47
mw
13.64 kDa
protein length
126 aa Sequence Blast
gene length
381 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
srfB
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    3,252,405 3,252,785

    The protein

    Protein family

  • thioesterase PaaI family (single member, according to UniProt)

    • Structure

  • [PDB|4QD8] (from Pseudomonas aeruginosa, 45% identity) [pubmed|]

    • Expression and Regulation

    Operons

    genes
    [gene|FDACEF9DDC3BEA4EB013AE67BC47ADA532F00205|comQ]-[gene|60D6EB02923D9ADE88F61A8CBBD882BA8BDD457E|comX]-[gene|5A00E233F0B5A0DAB18D2ECC55527F1911987F86|comP]-[gene|7832489F11F606BCF637EC23BAAB41AD10237EBB|comA]-[gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|2507523], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B560 (yuxO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1559 NBRP B. subtilis, Japan]
  • BKE31670 ([gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE31670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCCATCTCTACACCCCCCA, downstream forward: _UP4_TAAAAAAACAGCCGGAACTC
  • BKK31670 ([gene|015989AAB862E418C944AB35DA3605863F059CE9|yuxO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK31670 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ATCCATCTCTACACCCCCCA, downstream forward: _UP4_TAAAAAAACAGCCGGAACTC

    • References

  • 2507523