SubtiBank SubtiBank
yycB [2019-06-12 11:11:16]
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yycB [2019-06-12 11:11:16]

similar to permeases
locus
BSU40480
pI
10.50
mw
43.02 kDa
protein length
402 aa Sequence Blast
gene length
1209 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    4,159,790 4,160,998

    The protein

    Protein family

  • [SW|major facilitator superfamily] (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|1CB229DE87D56674903A8348657FA3B3117FEADD|yycC]-[gene|00F319EEC8420F859BA2657B9D4D1281853A94BD|yycB]
    description
    [Pubmed|12823818]

    regulatory mechanism

  • [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]: repression, [Pubmed|12823818], in [regulon|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA regulon]

    • regulation

  • repressed in the absence of good nitrogen sources (glutamine or ammonium) ([protein|search|TnrA]) [Pubmed|12823818]
    • view in new tab

    genes
    [gene|1CB229DE87D56674903A8348657FA3B3117FEADD|yycC]-[gene|00F319EEC8420F859BA2657B9D4D1281853A94BD|yycB]-[gene|CFEA05E10517C00222126F959A1D2DCE7604E478|yycA]
    description
    [Pubmed|22383849]

    regulatory mechanism

  • [protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]: repression, [Pubmed|12823818], in [regulon|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA regulon]

    • regulation

  • repressed in the absence of good nitrogen sources (glutamine or ammonium) ([protein|857EF1AC54DEA0690C01B7F8CEFFD16312C58F20|TnrA]) [Pubmed|12823818]
    • view in new tab

    Biological materials

    Mutant

  • MGNA-B832 (yycB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1831 NBRP B. subtilis, Japan]
  • BKE40480 ([gene|00F319EEC8420F859BA2657B9D4D1281853A94BD|yycB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAGCAGTTACTCCTCTTT, downstream forward: _UP4_TAAAGCGGGGAAGATATCTC
  • BKK40480 ([gene|00F319EEC8420F859BA2657B9D4D1281853A94BD|yycB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40480 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAGCAGTTACTCCTCTTT, downstream forward: _UP4_TAAAGCGGGGAAGATATCTC

    • References

  • 12823818,25755103